{"id":1466,"date":"2024-10-01T13:01:01","date_gmt":"2024-10-01T11:01:01","guid":{"rendered":"https:\/\/guillaume-guerard.com\/?page_id=1466"},"modified":"2024-10-01T13:51:45","modified_gmt":"2024-10-01T11:51:45","slug":"github-scientifique","status":"publish","type":"page","link":"https:\/\/guillaume-guerard.com\/en\/cours-de-methodologie\/github-scientifique\/","title":{"rendered":"Scientific Github"},"content":{"rendered":"<div data-elementor-type=\"wp-page\" data-elementor-id=\"1466\" class=\"elementor elementor-1466\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-74098c1 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"74098c1\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-0c4f77a\" data-id=\"0c4f77a\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-cfb4e70 elementor-widget elementor-widget-heading\" data-id=\"cfb4e70\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<div id=\"ez-toc-container\" class=\"ez-toc-v2_0_82_2 counter-hierarchy ez-toc-counter ez-toc-grey ez-toc-container-direction\">\n<div class=\"ez-toc-title-container\">\n<p class=\"ez-toc-title\" style=\"cursor:inherit\">Page contents<\/p>\n<span class=\"ez-toc-title-toggle\"><a href=\"#\" class=\"ez-toc-pull-right ez-toc-btn ez-toc-btn-xs ez-toc-btn-default ez-toc-toggle\" aria-label=\"Toggle Table of Contents\"><span class=\"ez-toc-js-icon-con\"><span class=\"\"><span class=\"eztoc-hide\" style=\"display:none;\">Toggle<\/span><span class=\"ez-toc-icon-toggle-span\"><svg style=\"fill: #999;color:#999\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" class=\"list-377408\" width=\"20px\" height=\"20px\" viewbox=\"0 0 24 24\" fill=\"none\"><path d=\"M6 6H4v2h2V6zm14 0H8v2h12V6zM4 11h2v2H4v-2zm16 0H8v2h12v-2zM4 16h2v2H4v-2zm16 0H8v2h12v-2z\" fill=\"currentColor\"><\/path><\/svg><svg style=\"fill: #999;color:#999\" class=\"arrow-unsorted-368013\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" width=\"10px\" height=\"10px\" viewbox=\"0 0 24 24\" version=\"1.2\" baseprofile=\"tiny\"><path d=\"M18.2 9.3l-6.2-6.3-6.2 6.3c-.2.2-.3.4-.3.7s.1.5.3.7c.2.2.4.3.7.3h11c.3 0 .5-.1.7-.3.2-.2.3-.5.3-.7s-.1-.5-.3-.7zM5.8 14.7l6.2 6.3 6.2-6.3c.2-.2.3-.5.3-.7s-.1-.5-.3-.7c-.2-.2-.4-.3-.7-.3h-11c-.3 0-.5.1-.7.3-.2.2-.3.5-.3.7s.1.5.3.7z\"\/><\/svg><\/span><\/span><\/span><\/a><\/span><\/div>\n<nav><ul class='ez-toc-list ez-toc-list-level-1' ><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-1\" href=\"https:\/\/guillaume-guerard.com\/en\/cours-de-methodologie\/github-scientifique\/#Creer_un_Github_scientifique_et_professionnel\" >Create a scientific and professional Github<\/a><\/li><li class='ez-toc-page-1 ez-toc-heading-level-2'><a class=\"ez-toc-link ez-toc-heading-2\" href=\"https:\/\/guillaume-guerard.com\/en\/cours-de-methodologie\/github-scientifique\/#Notebooks_et_Markdown\" >Notebooks and Markdown<\/a><\/li><\/ul><\/nav><\/div>\n<h2 class=\"elementor-heading-title elementor-size-default\"><span class=\"ez-toc-section\" id=\"Creer_un_Github_scientifique_et_professionnel\"><\/span>Create a scientific and professional Github<span class=\"ez-toc-section-end\"><\/span><\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-6eca1c5 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"6eca1c5\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-bcf90fd\" data-id=\"bcf90fd\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-e6134ab elementor-widget elementor-widget-text-editor\" data-id=\"e6134ab\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>Public access (like the option on Github) is one of the key concepts of open science, which aims to distribute the <a href=\"https:\/\/guillaume-guerard.com\/en\/cours-de-methodologie\/parfaire-la-section-resultats\/\">results<\/a> of the <a href=\"https:\/\/guillaume-guerard.com\/en\/cours-de-methodologie\/\">research<\/a> (e.g., academic scientific papers) to the public to accelerate research, without fees or other barriers to access. It has been adopted by a growing number of researchers and agencies across a variety of fields. At the same time, software developed during the scientific research process is often released as open source software (OSS) to promote reproducible research and increase the likelihood of greater impact. OSS can be copied and distributed at virtually no cost, potentially opening the door to unprecedented levels of sharing and collaborative innovation.<\/p><p>The reproducibility challenges and artifact trails that have been hosted at international conferences have strengthened the links between software and scientific papers. It can be argued that a paper is more likely to have real impact if its code is accessible; readers are able to examine the code, run the code, and evaluate the contributions by considering all the details of the work (which are often omitted from the paper).<\/p><p><img decoding=\"async\" class=\"alignnone wp-image-49 size-full\" src=\"http:\/\/guillaume-guerard.com\/wp-content\/uploads\/2023\/07\/logo_sc.png\" alt=\"Github\" width=\"238\" height=\"203\" \/><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-d21cef8 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"d21cef8\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-75d9cea\" data-id=\"75d9cea\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-bad4bbd elementor-widget elementor-widget-heading\" data-id=\"bad4bbd\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\"><span class=\"ez-toc-section\" id=\"Notebooks_et_Markdown\"><\/span>Notebooks and Markdown<span class=\"ez-toc-section-end\"><\/span><\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-c7a2170 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"c7a2170\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-6c5e8ca\" data-id=\"6c5e8ca\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-ecbf6e5 elementor-widget elementor-widget-text-editor\" data-id=\"ecbf6e5\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>Python is the primary language used in data science, and there are many different IDEs you can use to code in Python, but to create a structured report with clean code and annotations, Jupyter Notebooks are the way to go. Here are some tips to make your notebook more accessible:<\/p><p><strong>Use Markdown tags<\/strong>\u00a0: If your code is long or complex, it would be very helpful to have headings, subheadings, and Markdown descriptions for the pieces of code you worked on. By doing this, a non-technical person or someone who is not as expert in coding as you can understand why such steps are taken and what certain cells do.<\/p><p><img fetchpriority=\"high\" decoding=\"async\" class=\"alignnone wp-image-1473 size-large\" src=\"http:\/\/guillaume-guerard.com\/wp-content\/uploads\/2024\/10\/markdown1-1024x702.png\" alt=\"markdown\" width=\"1024\" height=\"702\" srcset=\"https:\/\/guillaume-guerard.com\/wp-content\/uploads\/2024\/10\/markdown1-1024x702.png 1024w, https:\/\/guillaume-guerard.com\/wp-content\/uploads\/2024\/10\/markdown1-300x206.png 300w, https:\/\/guillaume-guerard.com\/wp-content\/uploads\/2024\/10\/markdown1-768x526.png 768w, https:\/\/guillaume-guerard.com\/wp-content\/uploads\/2024\/10\/markdown1-1536x1053.png 1536w, https:\/\/guillaume-guerard.com\/wp-content\/uploads\/2024\/10\/markdown1-2048x1403.png 2048w, https:\/\/guillaume-guerard.com\/wp-content\/uploads\/2024\/10\/markdown1-18x12.png 18w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>","protected":false},"excerpt":{"rendered":"<p>Create a scientific and professional Github Public access (like the option on Github) is one of the key concepts in science\u2026 <\/p>","protected":false},"author":1,"featured_media":0,"parent":47,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"elementor_header_footer","meta":{"footnotes":""},"class_list":["post-1466","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/pages\/1466","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/comments?post=1466"}],"version-history":[{"count":7,"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/pages\/1466\/revisions"}],"predecessor-version":[{"id":1476,"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/pages\/1466\/revisions\/1476"}],"up":[{"embeddable":true,"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/pages\/47"}],"wp:attachment":[{"href":"https:\/\/guillaume-guerard.com\/en\/wp-json\/wp\/v2\/media?parent=1466"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}